Avalanche Workbench is a visual data analysis & DNA sequence data mining tool for biologists. It offers a visual graphic interface through which you can search (eSearch, eLink, eSummary, eFetch) biology databases such as NCBI or get visual access to sequence processing tools/servers. For peaks, four peaks. The award winning 4Peaks app helps molecular biologists to visualize and edit their DNA trace files. Analyzing sequences has never been so easy! Apple Design Award 2004. OS X 10.7 and above. This is the BEST Mac OS X application for viewing and editing sequence trace files. Download software patches ›. Sequencing Analysis Software uses a base-caller algorithm that performs base calling for pure and mixed base calls. The software analyzes, displays, edits, saves, and prints sample files that are generated from Applied Biosystems DNA analyzers and genetic analyzers.
- Sequence Scanner
- Dna Sequence Analysis Software
- Dna Sequence Analysis Software Free Mac
- Illumina Sequencing Analysis Viewer Download
Overview of Major Features
If you already own an older copy of MacVector, and would like to know what new features have been added since the version you own, you can find that information on this summary page.
Graphical Sequence Editing
MacVector can read and write DNA and Protein sequences in most popular file formats. In addition to directly editing sequences and features/annotations, MacVector has an intuitive 'Click Cloning' graphical interface that lets you easily replicate laboratory cloning experiments to create new molecules. MacVector uses the native Mac OS X Quartz graphics to generate publication quality images that can be scaled to any size with no loss of resolution. More details...
Gateway and Topo Cloning
MacVector supports the popular Gateway, TOPO TA and Zero Blunt cloning technologies from Invitrogen. With a few simple clicks from an intuitive graphical interface, you can replicate your biological manipulations at the bench to create new molecules with the correct sequences across the cloning and recombination junctions. More details...
Auto Annotation
You can scan an unannotated or partially annotated sequence against a folder on your hard drive and MacVector will identify matching features in sequences in the target folder and add them to your sequence. Because MacVector includes custom feature appearance information when annotating the sequence, you can use this to maintain a carefully curated set of your favorite genes and sequences each with a graphical appearance that best suits your needs. More details...
Primer Design
You can design primers for either PCR or Sequencing/Hybridization probes using a variety of primer design functions, including an interactive manual design interface along with several scanning functions such as the popular Primer3 algorithm. The interactive interface clearly shows which potential primers may have secondary structure problems, alternate binding sites or other characteristics that might impact their use in experiments. More details...
DNA Analysis
MacVector provides a wide variety of useful DNA analysis tools, including base composition analysis, Restriction Enzyme searches, DNA Subsequence searches and 'Dot-Plot' comparisons between DNA:DNA and DNA:Protein sequences. A Coding Preference toolbox lets you select a variety of algorithms to graphically scan a DNA sequence for likely protein coding open reading frames. More details...
Protein Analysis
Protein sequences can be reverse translated into DNA, compared using 'Dot-Plot' analysis and scanned for Proteolytic cleavage sites and amino acid sequence motifs. A comprehensive Protein Analysis Toolbox provides a wide variety of algorithms for analyzing the composition of proteins and presenting the results in graphical and tabular formats. More details...
Database Searching
MacVector has built-in Internet connectivity to the NCBI BLAST and Entrez databases. You can directly search Entrez for DNA or Protein sequences based on features, authors, keywords etc and directly download them into MacVector, complete with all features and annotations. The built-in BLAST interface lets you submit multiple BLAST jobs using DNA or Protein sequences and then download any matching sequences by selecting them from a hit list. Even without an Internet connection, MacVector can align sequences against any folder on your hard drive using a FastA algorithm, allowing for 'local' database searches. More details...
Multiple Sequence Alignment
Sequence Scanner
You can align unlimited numbers of DNA or Protein sequences using the ClustalW algorithm built in to MacVector. A full-featured editor lets you make manual adjustments to the alignments and view them using a wide variety of customizable color schemes. You can create publication quality graphical outputs of the alignments and view pairwise combinations of the sequences in aligned and matrix formats. More details...
Sequence Assembly
Sequence Assembly functionality in MacVector is now provided by two modules. First there is a built-in function called Align To Reference. This can be used for two different functions, Sequence Confirmation and cDNA Alignment. This is included with MacVector and allows you to import trace files or sequence files and assemble them against a template sequence. This is ideal for small scale sequencing projects, especially resequencing. For example, checking an in situ mutagenesis experiment, a construct you've just made, or confirming the sequence of a cloned PCR fragment. It's also an excellent tool for SNP analysis, with some special tools to allow you to easily spot mutations from your original template sequence.
For full scale sequencing projects where you do not know the sequence you'll need MacVector and a separately purchased plugin called Assembler. This is a full contig assembly application that uses the phred, phrap and cross_match algorithms from the University of Washington to assembles traces into contigs. It displays full quality scores of the reads and the aligned contigs. The trial version of MacVector also includes the Assembler plugin. Click here to go to the Assembler product page.
Dna Sequence Analysis Software
Please note that AssemblyLIGN is no longer included with MacVector.
The world’s leading bioinformatics software platform
Involved in therapeutic antibody R&D? Geneious Biologics screens and manages antibody sequence data in the cloud, transforming data management and significantly speeding up candidate selection. Learn more >
The user-friendly analysis and management tools in Geneious Prime help unlock the value in sequence data.
Painfree analysis with an intuitive, user-friendly interface
Increase process efficiency and improve data organisation
Comprehensive support for technical issues, set up and training
“I have found Geneious to be one of the most intuitive and powerful sequence analysis programs that I have used in all my years working in the molecular biology field. Thanks for making my life so much easier.”
– Prof. John Payne, University of California
Geneious Prime is a powerful bioinformatics software solution packed with fundamental molecular biology and sequence analysis tools
Molecular Cloning & Primer Design
Perform a wide-range of cloning and primer design operations within one interface.
NGS Analysis and Genomics
Take charge with industry-leading assembly and mapping algorithms, and superior visualizations.
Shared Database
Manage and store data effectively and get teams collaborating efficiently.
Import and Export Data
Import, export and convert common file types as well as their annotations and notes.
Workflows
Save time and ensure your work is repeatable by creating or using in-built workflows.
API and Plugin Development
Integrate crucial operations using Geneious Prime’s API and Plugin Development tools.
Dna Sequence Analysis Software Free Mac
“Geneious is an absolutely beautiful package to work with. We love it and we are telling everyone about it.”
– Charles Moore, Novartis Pharma AG, Switzerland
A History of Helping Scientists Innovate
“We created Geneious tools because we didn’t want our bright scientific minds spending 80 percent of their time doing basic data management. So we thought, if we can take away the pain and complexity of data computation and allow them to focus on what they’re really good at – which is understanding what that data means to uncover new scientific knowledge – then we’ve done our job.”
Illumina Sequencing Analysis Viewer Download
— Brett Ammundsen, Chief Executive Officer
About